RNA-binding protein with multiple splicing

AltitudeomicsDB
Protein Official symbol RBPMS
Aliases RBPMS HERMES
Chromosomal Location  8
Length 196
Uniprot ID Q93062
EC number None
Protein family Information(Pfam) PF00076;
PDB id 1BNY;5CYJ;5DET;
InterPro ID IPR012677;IPR035979;IPR000504;
dbSNP None

Protein Protein Interaction

0%
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AltitudeomicsDB
Protein 1 Protein 2 Combine Score
QKI RBPMS 0.877
RBPMS DCTN6 0.757
RBFOX2 RBPMS 0.756
QKI ATN1 0.712
ATN1 RBPMS 0.711
Gene Ontology Semantic Similarity
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# 11030 (RBPMS) 1822 (ATN1) 9444 (QKI) 23543 (RBFOX2)
11030 (RBPMS) 1.00 0.74 0.78 0.82
1822 (ATN1) 0.74 1.00 0.74 0.86
9444 (QKI) 0.78 0.74 1.00 0.83
23543 (RBFOX2) 0.82 0.86 0.83 1.00
Association with High Altitude
Protein Official symbol Source Organism Tissue of Expression Level of hypoxia Altitude Duration of experiment Level of expression Fold change Experiment details geographical location ethnicity of the patients Control group Control (Fold change) Reference (PMID)
RBPMS Toad Heart - 3464 m 33 day upregulated 8.561931441 RNA-seq Tibetan Plateau Asiatic toad 1 Zoige (High altitute Toad) Vs Chengdu (Low altitude toad) - 28673260
Association with TF
TF TF Entrez Gene Gene Entrez Type PMID Database
EP300 2033 RBPMS 11030 distal 22955619 TRANSFAC
Association with miRNA
miRTarBase ID miRNA Species (miRNA) Protein Official Symbol Human Entrez ID Species (Target Gene) Experiments Support Type References (PMID)
MIRT022396 hsa-miR-124-3p Homo sapiens RBPMS 11030 Homo sapiens Microarray Functional MTI (Weak) 18668037
MIRT027579 hsa-miR-98-5p Homo sapiens RBPMS 11030 Homo sapiens Microarray Functional MTI (Weak) 19088304
MIRT718577 hsa-miR-6128 Homo sapiens RBPMS 11030 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157
MIRT718576 hsa-miR-6505-5p Homo sapiens RBPMS 11030 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157
MIRT731644 hsa-miR-21-3p Homo sapiens RBPMS 11030 Homo sapiens Luciferase reporter assay Functional MTI 27166999
Gene Ontology
ID GO ID GO Term GO Type
11030 GO:0044822 poly GOTERM_MF_DIRECT
11030 GO:0000932 cytoplasmic mRNA processing body GOTERM_CC_DIRECT
11030 GO:0006396 RNA processing GOTERM_BP_DIRECT
11030 GO:0060391 positive regulation of SMAD protein import into nucleus GOTERM_BP_DIRECT
11030 GO:0003676 nucleic acid binding GOTERM_MF_DIRECT
11030 GO:0017069 TBP-class protein binding GOTERM_MF_DIRECT
11030 GO:0005737 cytoplasm GOTERM_CC_DIRECT
11030 GO:0042803 protein homodimerization activity GOTERM_MF_DIRECT
11030 GO:0003723 RNA binding GOTERM_MF_DIRECT
11030 GO:0006355 regulation of transcription GOTERM_BP_DIRECT
11030 GO:0000166 nucleotide binding GOTERM_MF_DIRECT
11030 GO:0010494 cytoplasmic stress granule GOTERM_CC_DIRECT
11030 GO:0000398 mRNA splicing GOTERM_BP_DIRECT
11030 GO:0005515 protein binding GOTERM_MF_DIRECT
11030 GO:0008143 NADH dehydrogenase GOTERM_MF_DIRECT
11030 GO:0006351 transcription GOTERM_BP_DIRECT
11030 GO:0005654 nucleoplasm GOTERM_CC_DIRECT
11030 GO:0006979 response to oxidative stress GOTERM_BP_DIRECT
11030 GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation GOTERM_BP_DIRECT
11030 GO:0003713 transcription coactivator activity GOTERM_MF_DIRECT
Pathways
Human Entrez ID KEGG ID KEGG Term
Association with Disease
Protein Official Symbol Human Entrez ID Disease Name Disease Id Disease Semantic Type Semantic score DSI DPI Disease Type
Association with Drug
Protein Official Symbol Human Entrez ID drug_claim_primary_name drug_name drug_chembl_id interaction_types