Retinitis pigmentosa 9 protein
AltitudeomicsDB
| Protein Official symbol |
RP9 |
| Aliases |
RP9 |
| Chromosomal Location |
7 |
| Length |
221 |
| Uniprot ID |
Q8TA86 |
| EC number |
None |
| Protein family Information(Pfam) |
None |
| PDB id |
None |
| InterPro ID |
IPR034585; |
| dbSNP |
rs104894037 rs104894039 rs150987618 |
AltitudeomicsDB
| Protein 1 |
Protein 2 |
Combine Score |
| PRPF4 |
PRPF3 |
0.996 |
| PRPF31 |
PRPF6 |
0.995 |
| PRPF31 |
PRPF3 |
0.994 |
| PRPF8 |
PRPF31 |
0.993 |
| PRPF8 |
PRPF3 |
0.992 |
| PRPF8 |
PRPF6 |
0.992 |
| PRPF3 |
PRPF6 |
0.991 |
| PRPF8 |
PRPF4 |
0.988 |
| PRPF4 |
PRPF6 |
0.986 |
| PRPF4 |
PRPF31 |
0.986 |
| PRPF3 |
RP9 |
0.877 |
| PRPF31 |
RP9 |
0.814 |
| PRPF8 |
RP9 |
0.809 |
| PRPF4 |
RP9 |
0.797 |
| IMPDH1 |
PRPF31 |
0.777 |
| RP9 |
BBS9 |
0.744 |
| FSCN2 |
RP9 |
0.735 |
| FKBP9 |
RP9 |
0.731 |
| FKBP9 |
KBTBD2 |
0.725 |
| RP9 |
PRPF6 |
0.724 |
| KBTBD2 |
RP9 |
0.721 |
| FSCN2 |
PRPF31 |
0.721 |
| IMPDH1 |
PRPF3 |
0.712 |
| FSCN2 |
PRPF3 |
0.701 |
| IMPDH1 |
RP9 |
0.7 |
Gene Ontology Semantic Similarity
Download Tab separated file
| # |
9129 (PRPF3) |
24148 (PRPF6) |
26121 (PRPF31) |
9128 (PRPF4) |
6100 (RP9) |
27241 (BBS9) |
10594 (PRPF8) |
3614 (IMPDH1) |
25794 (FSCN2) |
11328 (FKBP9) |
|
9129 (PRPF3)
|
1.00
|
0.75
|
0.81
|
0.86
|
0.96
|
0.73
|
0.80
|
0.57
|
0.54
|
0.36
|
|
24148 (PRPF6)
|
0.75
|
1.00
|
0.83
|
0.69
|
0.74
|
0.59
|
0.71
|
0.47
|
0.43
|
0.36
|
|
26121 (PRPF31)
|
0.81
|
0.83
|
1.00
|
0.80
|
0.81
|
0.54
|
0.75
|
0.57
|
0.41
|
0.36
|
|
9128 (PRPF4)
|
0.86
|
0.69
|
0.80
|
1.00
|
0.87
|
0.62
|
0.77
|
0.54
|
0.46
|
0.36
|
|
6100 (RP9)
|
0.96
|
0.74
|
0.81
|
0.87
|
1.00
|
0.71
|
0.79
|
0.61
|
0.53
|
0.36
|
|
27241 (BBS9)
|
0.73
|
0.59
|
0.54
|
0.62
|
0.71
|
1.00
|
0.49
|
0.36
|
0.55
|
0.36
|
|
10594 (PRPF8)
|
0.80
|
0.71
|
0.75
|
0.77
|
0.79
|
0.49
|
1.00
|
0.61
|
0.33
|
0.36
|
|
3614 (IMPDH1)
|
0.57
|
0.47
|
0.57
|
0.54
|
0.61
|
0.36
|
0.61
|
1.00
|
0.23
|
0.25
|
|
25794 (FSCN2)
|
0.54
|
0.43
|
0.41
|
0.46
|
0.53
|
0.55
|
0.33
|
0.23
|
1.00
|
0.24
|
|
11328 (FKBP9)
|
0.36
|
0.36
|
0.36
|
0.36
|
0.36
|
0.36
|
0.36
|
0.25
|
0.24
|
1.00
|
Association with High Altitude
| Protein Official symbol |
Source Organism |
Tissue of Expression |
Level of hypoxia |
Altitude |
Duration of experiment |
Level of expression |
Fold change |
Experiment details |
geographical location |
ethnicity of the patients |
Control group |
Control (Fold change) |
Reference (PMID) |
| RP9 |
Bird |
Lungs |
- |
4000 m |
Native |
downregulated |
-2.25 |
Sequencing |
Central Asia |
L. dichrous (Bird) |
1 |
L. dichrous vs. Po. Palustris |
31127049 |
Association with TF
| TF |
TF Entrez |
Gene |
Gene Entrez |
Type |
PMID |
Database |
| CTCF |
10664 |
RP9 |
6100 |
proximal_filtered |
22955619 |
TRANSFAC |
Association with miRNA
| miRTarBase ID |
miRNA |
Species (miRNA) |
Protein Official Symbol |
Human Entrez ID |
Species (Target Gene) |
Experiments |
Support Type |
References (PMID) |
Gene Ontology
| ID |
GO ID |
GO Term |
GO Type |
| 6100 |
GO:0005737 |
cytoplasm |
GOTERM_CC_DIRECT |
| 6100 |
GO:0005785 |
signal recognition particle receptor complex |
GOTERM_CC_DIRECT |
| 6100 |
GO:0044822 |
poly |
GOTERM_MF_DIRECT |
| 6100 |
GO:0046872 |
metal ion binding |
GOTERM_MF_DIRECT |
| 6100 |
GO:0005634 |
nucleus |
GOTERM_CC_DIRECT |
| 6100 |
GO:0005515 |
protein binding |
GOTERM_MF_DIRECT |
| 6100 |
GO:0008380 |
RNA splicing |
GOTERM_BP_DIRECT |
| 6100 |
GO:0050890 |
cognition |
GOTERM_BP_DIRECT |
Pathways
| Human Entrez ID |
KEGG ID |
KEGG Term |
Association with Disease
| Protein Official Symbol |
Human Entrez ID |
Disease Name |
Disease Id |
Disease Semantic Type |
Semantic score |
DSI |
DPI |
Disease Type |
| RP9 |
6100 |
RETINITIS PIGMENTOSA 9 |
C1867300 |
Disease or Syndrome |
0.62 |
0.672 |
0.414 |
disease |
| RP9 |
6100 |
Retinitis Pigmentosa |
C0035334 |
Disease or Syndrome |
0.41 |
0.672 |
0.414 |
disease |
Association with Drug
| Protein Official Symbol |
Human Entrez ID |
drug_claim_primary_name |
drug_name |
drug_chembl_id |
interaction_types |