Probable tRNA pseudouridine synthase 1

AltitudeomicsDB
Protein Official symbol TRUB1
Aliases TRUB1 PUS4
Chromosomal Location 10
Length 349
Uniprot ID Q8WWH5
EC number 5.4.99.-
Protein family Information(Pfam) PF01509;
PDB id None
InterPro ID IPR020103;IPR002501;IPR014780;
dbSNP rs34393297 rs7099565

Protein Protein Interaction

0%
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AltitudeomicsDB
Protein 1 Protein 2 Combine Score
NOP10 NHP2 0.9990000000000001
NOP56 NOP58 0.9990000000000001
NHP2 GAR1 0.9990000000000001
NOP10 GAR1 0.9990000000000001
NHP2 NOP58 0.9990000000000001
NOP56 NHP2 0.998
NOP56 NOP10 0.993
NOP58 GAR1 0.992
NOP56 GAR1 0.99
NOP10 NOP58 0.982
CDC5L TRUB1 0.98
NOP56 DDX55 0.956
TRUB1 GAR1 0.955
TRUB1 NHP2 0.953
NOP58 DDX55 0.9470000000000001
NHP2 DDX55 0.945
PUS1 TRUB1 0.94
TRUB1 DDX55 0.938
NOP56 TRUB1 0.9329999999999999
PUS7 TRUB1 0.9309999999999999
TRUB1 NOP58 0.929
NOP10 TRUB1 0.922
TRUB1 PUS3 0.917
PUS1 PUS7 0.915
Gene Ontology Semantic Similarity
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# 55505 (NOP10) 10528 (NOP56) 55651 (NHP2) 51602 (NOP58) 988 (CDC5L) 142940 (TRUB1) 80324 (PUS1) 54517 (PUS7) 54433 (GAR1) 57696 (DDX55) 83480 (PUS3)
55505 (NOP10) 1.00 0.86 0.97 0.83 0.66 0.18 0.54 0.73 0.87 0.77 0.18
10528 (NOP56) 0.86 1.00 0.91 0.86 0.71 0.18 0.51 0.76 0.81 0.79 0.18
55651 (NHP2) 0.97 0.91 1.00 0.89 0.74 0.18 0.66 0.79 0.90 0.83 0.18
51602 (NOP58) 0.83 0.86 0.89 1.00 0.70 0.18 0.50 0.74 0.79 0.76 0.18
988 (CDC5L) 0.66 0.71 0.74 0.70 1.00 0.18 0.47 0.60 0.68 0.65 0.18
142940 (TRUB1) 0.18 0.18 0.18 0.18 0.18 1.00 1.00 1.00 0.18 0.18 1.00
80324 (PUS1) 0.54 0.51 0.66 0.50 0.47 1.00 1.00 0.76 0.55 0.47 1.00
54517 (PUS7) 0.73 0.76 0.79 0.74 0.60 1.00 0.76 1.00 0.69 0.65 1.00
54433 (GAR1) 0.87 0.81 0.90 0.79 0.68 0.18 0.55 0.69 1.00 0.73 0.18
57696 (DDX55) 0.77 0.79 0.83 0.76 0.65 0.18 0.47 0.65 0.73 1.00 0.18
83480 (PUS3) 0.18 0.18 0.18 0.18 0.18 1.00 1.00 1.00 0.18 0.18 1.00
Association with High Altitude
Protein Official symbol Source Organism Tissue of Expression Level of hypoxia Altitude Duration of experiment Level of expression Fold change Experiment details geographical location ethnicity of the patients Control group Control (Fold change) Reference (PMID)
TRUB1 Rat Lungs - 7600 m 6 hours downregulated -0.5 2-DE Northern indo-australian plate Sprague-Dawley 1 Male SD rats weighing 220g 26022216
Association with TF
TF TF Entrez Gene Gene Entrez Type PMID Database
ELF1 1997 TRUB1 142940 proximal_filtered 22955619 TRANSFAC
Association with miRNA
miRTarBase ID miRNA Species (miRNA) Protein Official Symbol Human Entrez ID Species (Target Gene) Experiments Support Type References (PMID)
MIRT050885 hsa-miR-17-5p Homo sapiens TRUB1 142940 Homo sapiens CLASH Functional MTI (Weak) 23622248
MIRT055638 hsa-miR-4647 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT055605 hsa-miR-455-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055604 hsa-miR-153-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055633 hsa-miR-194-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT055606 hsa-miR-4729 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055638 hsa-miR-4647 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055607 hsa-miR-5700 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055636 hsa-miR-4426 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055604 hsa-miR-153-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT055633 hsa-miR-194-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055640 hsa-miR-4775 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT055605 hsa-miR-455-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT055607 hsa-miR-5700 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT055637 hsa-miR-4451 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT055639 hsa-miR-4662b Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055640 hsa-miR-4775 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055637 hsa-miR-4451 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT055606 hsa-miR-4729 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT055639 hsa-miR-4662b Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT055636 hsa-miR-4426 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT176911 hsa-miR-4738-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT176907 hsa-miR-510-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT176907 hsa-miR-510-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT176911 hsa-miR-4738-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT176908 hsa-miR-548g-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT176908 hsa-miR-548g-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530863 hsa-miR-6873-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530866 hsa-miR-5582-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530868 hsa-miR-548x-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530880 hsa-miR-4753-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530868 hsa-miR-548x-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530879 hsa-miR-15a-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT530865 hsa-miR-6845-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530874 hsa-miR-548ae-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530875 hsa-miR-8067 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT530860 hsa-miR-6809-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530869 hsa-miR-548j-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530874 hsa-miR-548ae-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530876 hsa-miR-374b-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530877 hsa-miR-374a-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT530861 hsa-miR-6833-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530861 hsa-miR-6833-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530871 hsa-miR-548am-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530876 hsa-miR-374b-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT530877 hsa-miR-374a-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530878 hsa-miR-3922-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT530879 hsa-miR-15a-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530860 hsa-miR-6809-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530872 hsa-miR-548aj-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530867 hsa-miR-2115-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530869 hsa-miR-548j-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530870 hsa-miR-548aq-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530878 hsa-miR-3922-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530880 hsa-miR-4753-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT530862 hsa-miR-4768-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530867 hsa-miR-2115-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530871 hsa-miR-548am-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530864 hsa-miR-202-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530873 hsa-miR-548ah-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530862 hsa-miR-4768-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530870 hsa-miR-548aq-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530863 hsa-miR-6873-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530865 hsa-miR-6845-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 27292025
MIRT530866 hsa-miR-5582-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530872 hsa-miR-548aj-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530873 hsa-miR-548ah-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT530875 hsa-miR-8067 Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620
MIRT551640 hsa-miR-132-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT551636 hsa-miR-4650-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT551636 hsa-miR-4650-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT551638 hsa-miR-590-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT551637 hsa-miR-323a-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT551639 hsa-miR-212-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT551640 hsa-miR-132-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT551633 hsa-miR-4446-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT551635 hsa-miR-3529-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT551639 hsa-miR-212-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT551634 hsa-miR-379-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT551638 hsa-miR-590-3p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 20371350
MIRT551633 hsa-miR-4446-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT551634 hsa-miR-379-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
MIRT551635 hsa-miR-3529-5p Homo sapiens TRUB1 142940 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407
Gene Ontology
ID GO ID GO Term GO Type
142940 GO:1990481 mRNA pseudouridine synthesis GOTERM_BP_DIRECT
142940 GO:0009982 biotin binding GOTERM_MF_DIRECT
142940 GO:0003723 RNA binding GOTERM_MF_DIRECT
142940 GO:0006400 tRNA modification GOTERM_BP_DIRECT
Pathways
Human Entrez ID KEGG ID KEGG Term
Association with Disease
Protein Official Symbol Human Entrez ID Disease Name Disease Id Disease Semantic Type Semantic score DSI DPI Disease Type
Association with Drug
Protein Official Symbol Human Entrez ID drug_claim_primary_name drug_name drug_chembl_id interaction_types